Edited by: Bradley M. Tebo, Oregon Health and Science University, United States
Reviewed by: Kai Waldemar Finster, Aarhus University, Denmark; Nancy Hinman, University of Montana, United States
This article was submitted to Microbiological Chemistry and Geomicrobiology, a section of the journal Frontiers in Earth Science
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
The exploration of Mars is largely based on comparisons with Earth analog environments and processes. The up-coming NASA Mars mission 2020 and ExoMars 2020 has the explicit aim to search for signs of life on Mars. During preparations for the missions, glaring gaps in one specific field was pointed out: the lack of a fossil record in igneous and volcanic rock. Earth’s fossil record is almost exclusively based on findings in sedimentary rocks, while igneous rocks have been considered barren of life, including a fossil record of past life. Since martian volcanic rocks will be targeted in the search for biosignatures, the lack of a terrestrial analog fossil record is an obvious impediment to the scientific aim of the mission. Here we will briefly review the knowledge of microscopic life in deep rock and deep time. Focus will be on underexplored environments in subseafloor crustal rocks, and on ancient environments harboring early prokaryotic and eukaryotic lineages. We will highlight some of the aspects that need immediate attention and further investigations to meet the scientific goals of the missions. The current paper is a first step toward the long-term aim to establish an atlas of the fossil record in volcanic rocks, which can be of use for the up-coming space missions.
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NASAs Mars mission 2020 is planned for launch in 2020 (
Discussions regarding the most promising landing sites and what geological environments that are most favorable from a context of harboring life, has preceded the planning- and are still on-going. In both Mars programs, an analogous terrestrial fossil record has been used to prepare for where geographically, the search should be focused, and what to search for (
The exploration of life in deep environments has during the last two decades significantly enhanced our understanding of the distribution, abundance and diversity of life on Earth. This has also opened up the question for potential life beyond our own planet (
The igneous oceanic crust consists exclusively of volcanically erupted basalts, geochemically very similar to the volcanic rocks that dominate the Martian geology. It is only recently that the igneous oceanic crust has been recognized as the largest aquifer on Earth and, with that, also potentially the world’s largest microbial habitat (
Endolithic (rock-dwelling) microorganisms use micro-fractures in the host rock for migration and colonization and grow complex and extended communities on the fracture walls (
To be able to use the fossil record in volcanic rocks as an analogous system in Martian exploration, a more comprehensive understanding of the deep life is needed, as well as more information of how this life is fossilized and preserved. We need to establish a fossil record coherent over time, ranging from the Archean to present, in the form of an atlas to better classify fossil findings but also to show where and what to search for. Firm protocols are needed on how to study and prove biogenicity of such fossils. By doing this we will enhance our understanding of early and present life on Earth, but also how to approach the task of searching for signs of life on other planets. Thus, exploring the deep life of our planet is one of the great challenges of our time and will lead to a better understanding of the distribution of life on Earth and beyond.
The definition of the deep biosphere comprises ecosystems in both oceanic and continental deep settings, and the habitability with respect to depth is restricted by rock porosity, water availability and maximum temperature, depending on the local geothermal gradient (
Conceptual image modified after
Rock dwelling microorganisms are termed endoliths, and can be divided into sub-categories depending on their occurrence in, and interaction with, the host rock. Microorganisms that actively create habitable cavities through chemical and/or physical processes are called euendoliths. Microorganisms that colonize pre-existent fissures and cracks are called chasmoendoliths, and microorganisms that colonize pre-existent structural cavities such as vesicles in basalts are called cryptoendoliths (
A number of reviews of the continental and the oceanic deep realm have been published, the latter usually focused on sediments (
The subsurface realm is a highly variable environment with steep physical and chemical gradients. Ecologically distinct, specialized macro- and micro-niches are orchestrated by geological prerequisites such as plate tectonics, and confined by geochemical conditions like the composition of hydrothermal fluids. The ecological composition of microbial populations vary depending on if they live in an ultramafic environment subjected to serpentinization, a geothermal area, or in a subseafloor basalt. In the dark subsurface, microorganisms gain energy from coupling of thermodynamically favorable redox reactions. The basis of the deep ecosystems consist of chemoautotrophs; organisms that gain energy through the oxidation of electron donating molecules, as opposed to photoautotrophs, which use solar energy. Lithoautotrophs, in turn, utilize inorganic substrates like minerals to gain energy and heterotrophs feed on the organic biomass produced by, or available in, other organisms, such as chemoautotrophic communities and their extracellular substances.
H2, CH4, H2S, S0, S2O32−, Fe2+, Mn2+, NH4+, NO2− and organic matter are the most accessible electron donors in subsurface settings, and CO2, SO42−, or O2 are the most likely electron acceptors (
Endolithic microorganisms use interconnected networks of open pore space to migrate and colonize the host rock. The upper layers of oceanic crust (
In contrast, the continental crystalline bedrock is of low porosity. Here, interconnected networks of fractures are formed and re-activated episodically by tectonic forces, surficial pressure release, and cooling (
In both oceanic and continental igneous crust, the initial stages of microbial colonization are characterized by a biofilm that is laid down on the inner walls of the open pore space and usually cover the entire surface (e.g.,
Conceptual image from
The microbial communities are clearly influenced by the physical nature of their habitats, since host rock and secondary mineralizations control the habitable space. At the same time, the microorganisms shape their own habitable environment by active bio-mediated weathering. Fungal hyphae frequently dissolve and penetrate secondary minerals (
Conspicuous granular and tubular cavities in volcanic glass are a widespread phenomenon in the oceanic crust, often attributed to microbial activity and etching (
Already in 1986
The direction of ichnofossils is perpendicular to a glass surface and inward into the glass. The granular type is made up of micron-sized, near-spherical cavities etched into the glass and later filled with authigenic minerals such as clays and Fe-oxides/hydroxides. The granular ichnofossils usually occur in clusters and are irregularly distributed on both sides of a fracture. The tubular ichnofossils consists of smoothly curved tubes, with varying morphologies including branching, spiraling, or segmented textures. Diameters are normally between one to a few microns, and ten to hundreds of microns in length. The traces usually occurs in assemblages irregularly distributed with respect to the opposing side of any cracks and are commonly associated with granular cavities. A comprehensive photographic atlas of the ichnofossils has been produced by
The biogenicity of ichnofossils has lately been challenged, especially ichnofossils in ancient ophiolites and greenstone belts (
Encrusted or fossilized coccoidal microorganisms have been observed in dredged samples of seafloor-exposed basalt (
The fossilized microorganisms comprise crypto-, chasmo-, and euendoliths and they can be divided into two main types, depending on preservation; (1) microorganisms enclosed and preserved in vein-filling minerals, commonly carbonate, or (2) fossilized communities mineralized and preserved directly into an open pore space (thus not entombed in secondary minerals). The first type consists of live microorganisms that have been instantly petrified in secondary mineral phases due to hydrothermal activity or alteration of the crust. They are usually permineralized by poorly crystalline clay phases and iron oxides with a high organic content, including elevated carbon levels, phosphates, hydrocarbons, lipids and occasionally even chitin (
Microbial colonization occurs relatively early after cooling of the volcanic rock, presumably while fluid-flow is still active, and prior to substantial formation of secondary minerals. Colonization is initiated by the formation of a pioneer-type biofilm lining the pore space interiors (
Eukaryotic and prokaryotic fossils found in deep subsurface basaltic habitats. Panels
Filamentous fossils in the deep crust, have almost exclusively been interpreted as the remains of fungal hyphae, and when found in complex extensive networks, as fungal mycelia. They commonly have characteristic fungal morphologies such as repetitive septa, anastomoses between branches, a central pore and, though rarely, chitin in the cell walls (
A close ecological association between heterotrophic fungi and chemoautotrophic prokaryotes has been identified in fossilized material. The symbiotic nature of this relationship may be a prerequisite for eukaryotic colonization and persistence in the subseafloor crust (
Ocean drilling program sample 197-1204A-7R4, 1 from Detroit Seamount. EDS-elemental map of a microstromatolite shown in cross section. The large image
The chemical and mineralogical composition of fossilized microorganisms in deep crustal habitats is often dominated by a poorly crystalline mix of Si, Fe, Al, Mg, and C with minor amounts of Na, K, Ti, and Ca, usually corresponding to smectite or montmorillonite-like clays (
The fossilization process can be described as a transition in which the primary organic material of the organisms matures to a carbonaceous material prior to final mineralization by clays and Fe-oxides (
The enrichment of C and the high degree of organic remains present in microbial fossils may be due to the distribution of elements within the fossils. Silicification is known to preserve microbial morphologies and cell content to some extent (
The fossils in deep crystalline basement is not an exception and are, as all microfossils, tested against biogenicity criteria to exclude a possible abiotic explanation (
The most abundant rock type on Mars is mafic in composition with a volcanic origin, similar to terrestrial basalts (
Establishing an atlas of fossils in volcanic rocks on Earth seems a viable strategy for the search of fossils in martian volcanic rocks. However, it should be pointed out that the means to the search and detection of fossils on Mars is hugely different from that of Earth. Most analytical work on the terrestrial microfossil record is being done in laboratories while the fossils on Mars will be investigated, to a high degree,
To finalize a microfossil atlas for Mars missions, the fossil record of volcanic rocks on Earth should be investigated and described as detailed as possible. We need to enhance the current knowledge of fossilized microorganisms in deep igneous rock and in deep time. The ambition should be to establish a fossil record from the present and backward, in order to trace microbial components of the deep biosphere in time. This will involve samples from different subsurface and subseafloor settings; using samples from mines, subsurface research facilities and drill cores from IODP and ICDP. New analytical approaches need to be tested and evaluated to be able to extract as much paleobiological information as possible from fossils. This knowledge could be used for
In a second step, the acquired knowledge needs to be approached in such a way that it is possible to repeat on Mars, and thus adapted for Martian conditions and payload. Parameters such as camera resolution, minimum point detection by instrumentation and selection of the most prominent rock sample must be considered. Aspects like geological context, microbial morphology, mineralogy, chemical composition, fossilization conditions and the presence of biomarkers should also be taken into consideration in a final evaluation.
The current scientific aims in deep biosphere research can thus be summarized as follows:
Establish a fossil record in volcanic rocks on Earth ranging from present to the Archaean. What microorganisms are most easily preserved? What geochemical conditions control fossilization? How is the fossil record altered over time?
Can we detect and select samples of biological interest with the instrumentation available on the Mars 2020 rover and ExoMars? Is the resolution of the payload instruments enough? What parameters should protocols for biosignature detection be based on; mineralogy, textures, organic compounds?
What would be the most ideal approach for Mars sample return? What samples should be targeted for sample return? What Earth-based methods are most suitable?
To address these aims and formulate an exploration strategy for microfossils in volcanic rocks we need to consider:
Optical assessment and macro-studies of samples (simulation of mars rover conditions).
Establishing a microfossil atlas of volcanic rocks.
The first step in the identification of possible
SHERLOC (The Scanning Habitable Environments with Raman and Luminescence for Organics and Chemicals) is an arm-mounted, Deep UV (DUV) resonance Raman and fluorescence spectrometer capable of analysis at <100 μm spot size. The laser is integrated to an autofocusing/scanning optical system, and co-boresighted to a context imager, which at the most typical use has a resolution of 15 μm/pixel corresponding to a spatial resolution of approximately 50–60 μm (Kenneth Williford, personal communication). In addition to the combined spectroscopic and macro imaging component, SHERLOC also includes a near-field-to-infinity imaging component called WATSON (Wide Angle Topographic Sensor for Operations and eNgineering), which enables science operations and imaging. WATSON captures the larger context images for the very detailed information that SHERLOC collects.
ExoMars Panoramic camera (PanCam) (
PanCam and CLUPI can be used simultaneously to visualize outcrops and rocks at progressively higher resolution. PanCam and CLUPI can also view drilling operations. As the drill penetrates into the ground, fines will be collected of which CLUPI can obtain high resolution images at 39 and 13 (drill lowered) μm/pixel (
Resolution of the payload cameras controls the possible detection limit. Therefore, because of size limitations, identification and characterization of individual filaments and cell structures will not be possible with the current optical instrumentation. This also includes the detection of narrow ichnofossils and similar microbial traces. Instead, an approach involving structures <50–60 μm have to be developed. This includes fossilized communities with an internal morphological variation that may be detectable, or with a diagnostic mineralogy/geochemistry. Examples of possible targets are three-dimensional fungal mycelium with diameters exceeding 1 mm (
Stereomicroscopic images of fossilized fungal mycelia in a subseafloor basalt-vesicle
During mineralization and fossilization of microorganisms, organic remains are incorporated and bound by mineral phases, especially iron oxides and clays. If the fossils only experience moderate taphonomic alterations during diagenesis, the organic content will remain more or less unaltered and easy to detect by
As discussed above, the optical system on SHERLOC is coupled with a Deep UV (DUV) resonance Raman and fluorescence spectrometer, utilizing a 248.6-nm DUV laser with <100 μm spot size. Deep UV-induced native fluorescence is very sensitive to condensed carbon and aromatic organics, with a detection-capacity at, or below, 10–6 w/w (1 ppm) at <100 μm. SHERLOC’s deep UV resonance Raman therefore enables detection and classification of aromatic and aliphatic organics with sensitivities of 10–2 to below 10–4 w/w at <100 μm spatial scales. Additionally, the deep UV Raman allows detection and classification of aqueous minerals with grain sizes below 20 μm.
The fungal hyphae and the Frutexites in
Pancam on ExoMars is coaligned with an IR-spectrometer (ISEM) that enables identification of mineral phases in bulk rock- or soil samples at a distance. As mentioned above, the Ma_MISS is a miniaturized IR spectrometer integrated in the drill tool for imaging of the borehole wall as the drill is being operated. Ma_MISS has a spectral range of 0.4–2.2 mm with spatial resolution of 120 μm. CLUPI, however, is not coupled with any instruments for chemical detection. When samples have been selected by Pancam, ISEM, and CLUPI, they are deposited in the core sample transport mechanism (CSTM) where PanCam HRC and CLUPI can image the sample during a few minutes. After the imaging exercise, the CSTM move the sample into the analytical laboratory where a rock crusher produce particulate matter having a Gaussian size distribution, with a median value of 250 μm. The implications of this maneuver is that any identified morphological structures of interest will be destroyed, and correlation between morphological biosignatures and molecular fossils will thus thereafter be impossible.
Microorganisms continually interact with their environment through their metabolism, which itself fosters mineralization and may favor fossilization. Secondary minerals resulting from metabolic activity are commonly of intermediate to high specificity for the actual metabolism. Detailed
Miniaturized laser ablation ionization mass spectrometry (LIMS)-time-of-flight mass spectrometer for space missions capable of performing
Drill cores and other kind of samples retrieved from Mars offer the opportunity of a considerably more detailed chemical and morphological sample investigation. As long as the payload instrumentations enable sampling of material with a high potential for biosignature preservation, the chances of identifying and characterizing morphological and/or molecular fossils in a piece of rock is therefore higher by magnitudes in laboratories on Earth compared to
Microimaging techniques are central in all microfossil investigations, in order to resolve microbial morphology, variations in composition and relation to host rock and associated mineral phases. Methods and instrumentation can vary depending on access to equipment and facilities. For example, synchrotron-based X-ray tomographic microscopy (SRXTM) is a non-invasive technique that allows the study of rock and fossil structures in 3 dimensions, which has been decisive in the identification of deep-biosphere fossils of different ages (
For the examination of volcanic biosignatures and fossils, initial mineralogical and fossil identification should be performed using a combination of light and fluorescence microscopy, scanning electron microscopy (SEM) coupled with energy dispersive X-ray spectroscopy (EDS), X-ray diffraction (XRD), and X-ray fluorescence (XRF). Further detection and characterization of organic material in fossils may be targeted by Raman spectroscopy and Time-of-Flight secondary ion mass spectrometry (ToF-SIMS) (
The above analysis should also be complemented by bulk analyses. The extraction/characterization of biomarkers may be performed using gas chromatography (GC), coupled gas chromatography/mass spectrometry (GC/MS), and coupled high-pressure liquid chromatography/mass spectrometry (HPLC/MS). For compound-specific stable carbon isotope compositions, gas chromatography-isotope ratio monitoring-mass spectrometry (GC-irm-MS) can be used.
To establish an atlas of volcanic-based microfossils for the upcoming Mars missions, we need to enhance the current knowledge of fossilized microorganisms in deep igneous rock and in deep time, as reviewed above. The ambition should be to establish a fossil record from the present and backward, to trace microbial components of the deep biosphere in time, and to establish an improved framework for the timing of major evolutionary lineages. The main goal is to apply this knowledge to future exploration missions on Mars, with the possibility of identifying extra-terrestrial fossilized microorganisms from volcanic habitats.
Based on the contents of this review and the research covered herein, we propose to establish a microfossil atlas, covering all known aspects of the ecology of volcanic habitats on Earth, including prevalent information about trace and body fossils of prokaryotic and eukaryotic nature. To accomplish this, we need the combining results from all working areas as reviewed above; including information about microbial morphology, organic microfossil-content (biomarkers) and elemental and isotopic content of igneous-dwelling fossils and their associated biominerals. A first rough classification will primarily be based on morphology, but biomarkers and relevant isotopic fractionations will be added to this scenario to enhance the classification and to make it taxonomically robust. A combination of biomarkers and isotopes will make it possible to discriminate between groups of microorganisms based on metabolisms such as, for example, methanogens and methanotrophs. Species discrimination is made possible by the presence and detection of different lipids and δ13C values within fossil microorganisms and/or associated biominerals (in the case of δ13C) (
The current payloads of NASAs Mars 2020 and the ExoMars missions are capable of analyzing structures <60 μm, possibly somewhat smaller. Therefore, both missions will be able to target larger biogenic structures from volcanic rocks, such as mm-sized mineralized fungal mycelia, or larger microstromatolites in open vesicles. The ExoMars cameras with a resolution of 8 μm/px has a greater chance of identifying small features and individual hyphae, as seen in
MI designed and implemented the initial study, contributed with manuscript conception and manuscript writing. TS contributed with manuscript conception, manuscript writing, and ESEM-EDS analysis. D-TC contributed with manuscript conception and writing. All authors aware of, read and approved, the submitted version of the manuscript.
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
The authors wish to thank Stefan Bengtson and Veneta Belivanova, Swedish Museum of Natural History, for production of SRXTM, ESEM and optical microscopy images. Federica Marone, Swiss Light Source and Paul Scherrer Institute, Switzerland for synchrotron imaging and reconstruction. Anna Neubeck, Uppsala University, for contributing with the original image for