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The investigation of reaction mechanisms in the interstellar medium requires the evaluation of reaction rates and branching ratios, which can be effectively obtained in the framework of the ab-initio transition state/master equation formalism. However, the reliability of this approach relies on the computation of accurate reaction enthalpies and activation energies for all the paths characterizing the potential energy surface under investigation. Two effective yet reliable parameter-free model chemistries are introduced to obtain accurate energies of all stationary points, with structural determination performed using double-hybrid density functionals. After their validation, these model chemistries have been employed to analyze the competition between hydrogen abstraction and addition/elimination in the reaction between the CN radical and ethylene or methanimine. The energetics has then been complemented by a kinetic study. The results provide new information about important reactive channels operative in different regions of the interstellar medium and in the atmospheres of exoplanets. These further extend the recent general addition/elimination mechanism for the formation of “complex imines” from the reaction of methanimine with a small radical species.
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For many years, the interstellar medium (ISM) was believed to be a highly inhospitable place to host organic molecules, in particular those with a prebiotic character. This thought, however, changed about 80 years ago with the identification of optical absorption lines of CN and CH (
Most of our understanding about the composition of the interstellar medium and planetary atmospheres comes from spectroscopic observations, with rotational spectroscopy playing a pivotal role, also owing to the unprecedented resolution and sensitivity of modern interferometric observatories such as the Atacama Large Millimeter/submillimeter Array (ALMA). Among the species unequivocally detected in the ISM, the so-called “interstellar complex organic molecules” [iCOMS; (
Life circle of a star and the corresponding molecular complexity. In the insets: The delivery of pre-biological molecules to Earth
Interstellar synthesis can occur according to two paradigms that conceive reactions taking place in the gas phase or on the surface of icy dust particles, with the focus of the present paper being on the first alternative. For modeling the complex network of elementary reactions occurring in astronomical objects, a large number of physical-chemical parameters (activation energies, reaction enthalpies and barriers, rate constants, …) is required. However, only a small fraction of the elementary reactions has been characterized in laboratory experiments under conditions mimicking the real ones, a major issue being the difficulty to reproduce the extreme interstellar environments. For this reason, accurate state-of-the-art computational approaches play a fundamental role in studying unstable species and analyzing feasible reaction mechanisms (
As suggested by
The prerequisite of any accurate kinetic study is the characterization of all the stationary points (minima and transition states) of the reactive potential energy surface (PES) ruling the process under investigation. This step is conveniently performed using hybrid or double-hybrid density functionals that incorporate empirical dispersion corrections by means of the so-called D3 model combined with Becke-Johnson damping [D3BJ; (
The methodology presented in this work focuses on the energetics and implies that geometries are optimized using a double-hybrid density functional as explained above. The first model chemistry we address is the so-called ‘jun-Cheap’ scheme (
An alternative model (hereafter referred to as the jun-F12 scheme) replaces the conventional CCSD(T) method with its explicitly-correlated CCSD(T)-F12 counterpart (
To benchmark the performance of the two model chemistries introduced above, reference electronic energies are obtained by means of the so-called HEAT-like (HL) scheme, closely resembling the original HEAT methodology proposed by Stanton and co-workers (
As evident from the formula above, HF and CCSD(T) correlation energies are extrapolated separately (differently from the jun-Cheap scheme). In particular, the HF CBS limit is estimated by using Feller exponential formula (
This is a three-point extrapolation expression used in conjunction with triple- quadruple-, and quintuple-zeta basis sets. Instead, the CBS limit of the CCSD(T) correlation energy is obtained using the two-point
A term not included in
As far as technical details are concerned, all DFT, MP2 and single-point energy CCSD(T) computations are performed using the Gaussian program package (
Global and channel-specific rate constants are computed solving the multi-well one-dimensional master equation using the chemically significant eigenvalues (CSEs) method within the Rice-Ramsperger-Kassel-Marcus (RRKM) approximation (
For channels ruled by a distinct saddle point, rate coefficients are determined using conventional transition state theory (TST) within the rigid-rotor harmonic-oscillator (RRHO) approximation (
To model the temperature dependence, the rate constants are evaluated at different temperatures and fitted using the three-parameter modified Arrhenius equation proposed by Kooij (
All kinetic computations presented in this manuscript have been performed with the MESS code (
As mentioned above, reactions in the ISM require a reactive species, which is often an open-shell molecule. Unfortunately, these are challenging species and the presence of large spin contamination from higher spin states can strongly distort the reactive PESs described using unrestricted (U) methods (
As a first benchmark, we focus our attention on the electronic energy contributions to reaction and activation energies employing as references the very accurate results of the well-known DBH24 database (
Computed reaction energies for NH, NS, UA, and HT reactions from the DBH24/08 database at different levels of theory. All values are in kJ/mol.
Reactions | Reaction energy | ||||
---|---|---|---|---|---|
CCSD(T) |
jun-F12 | jun-Cheap | Reference |
||
Heavy-Atom Transfer | |||||
NH1 | H• + N2O → OH• + N2 | −280.6 | −275.3 | −275.0 | −273.4 |
NH2 | H• + ClH → HCl + H• | 0.0 | 0.0 | 0.0 | 0.0 |
NH3 |
|
−230.0 | −222.6 | −222.6 | −222.8 |
Nucleophilic Substitution | |||||
NS1 | Cl−…CH3Cl → ClCH3…Cl− | 0.0 | 0.0 | 0.0 | 0.0 |
NS2 | F−…CH3Cl → FCH3…Cl− | −108.6 | 108.2 | −107.5 | −108.7 |
NS3 | OH− + CH3F → HOCH3 + F− | −84.4 | −85.3 | −83.0 | −84.1 |
Unimolecular and Association | |||||
UA1 |
|
17.6 | 15.3 | 15.5 | 15.7 |
UA2 |
|
−168.0 | −168.6 | −168.6 | −167.5 |
UA3 | HCN ↔HNC | 61.4 | 61.8 | 61.6 | 63.8 |
Hydrogen Transfer | |||||
HT1 |
|
−50.2 | −54.1 | −56.1 | −53.9 |
HT2 | H• + OH• → H2 + 3O | −17.8 | −11.2 | −9.4 | −10.9 |
HT3 | H• + H2S → H2 + HS• | −62.8 | −59.7 | −59.6 | −57.4 |
— | MAX |
7.2 | 2.3 | 2.2 | — |
— | MUE |
3.6 | 1.0 | 1.4 | — |
In conjunction with the jun-cc-pVTZ basis set (jun-cc-pV(T+
From
Maximum unsigned error.
Mean unsigned error.
From the inspection of
In
Computed equilibrium barrier heights for NH, NS, UA and HT reactions from the DBH24/08 database at different levels of theory. All values are in kJ/mol.
Reactions | Forward/reverse barrier height | ||||
---|---|---|---|---|---|
CCSD(T) |
jun-F12 | jun-Cheap | Reference |
||
Heavy-Atom Transfer | |||||
NH1 |
H• + N2O → OH• + N2 | 74.9/355.5 | 73.7/349.0 | 73.3/348.3 | 71.7/345.1 |
NH2 | H• + ClH → HCl + H• | 79.0/79.0 | 74.8/74.8 | 72.4/72.4 | 75.3/75.3 |
NH3 |
|
30.2/260.2 | 29.8/252.4 | 30.0/252.6 | 28.2/251.0 |
Nucleophilic Substitution | |||||
NS1 | Cl−…CH3Cl → ClCH3…Cl− | 56.7/56.7 | 56.3/56.3 | 55.5/55.5 | 56.1/56.1 |
NS2 | F−…CH3Cl → FCH3…Cl− | 14.7/123.3 | 14.4/122.6 | 14.2/121.7 | 14.4/123.1 |
NS3 | OH− + CH3F → HOCH3 + F− | −10.0/74.4 | −11.8/73.5 | −10.4/72.6 | −10.2/73.9 |
Unimolecular and Association | |||||
UA1 |
|
63.7/46.1 | 61.2/45.9 | 60.0/46.5 | 60.1/44.4 |
UA2 |
|
10.2/178.2 | 8.6/177.2 | 7.9/176.5 | 7.2/174.7 |
UA3 | HCN ↔HNC | 198.5/137.1 | 199.6/137.8 | 200.7/139.1 | 201.1/137.3 |
Hydrogen Transfer | |||||
HT1 |
|
29.5/79.7 | 28.0/82.1 | 27.7/83.8 | 28.1/82.0 |
HT2 |
H• + OH• → H2 + 3O | 43.4/61.2 | 46.7/57.9 | 48.2/57.6 | 44.8/55.7 |
HT3 |
H• + H2S → H2 + HS• | 17.7/80.5 | 16.6/76.3 | 15.5/75.1 | 15.1/72.5 |
— | MAX |
10.4 | 3.8 | 3.3 | — |
— | MUE |
3.0 | 1.2 | 1.5 | — |
In conjunction with the jun-cc-pVTZ basis set (jun-cc-pV(T+
From
Spin-orbit contributions on the reverse reaction barrier.
Spin-orbit contributions on the forward reaction barrier.
Maximum unsigned error.
Mean unsigned error.
Together with the accuracy of the electronic energies, also the quality of the geometrical structures employed in their evaluation can play a role in the final results (
Computed equilibrium barrier heights for prototypical extraction and addition reactions: different contributions on top of the jun-Cheap approach. All values are in kJ/mol.
Reactions | Forward/reverse barrier height | ||||||
---|---|---|---|---|---|---|---|
jun-Cheap | ΔGeom | ΔCBS-CV | ΔHL | ΔZPE-H | ΔZPE(A-H) | ||
Ex1 |
|
27.7/83.8 | 0.1/0.1 | −0.5/−1.3 | −0.3/−0.4 | −6.4/−0.8 | −0.2/−0.1 |
Ex2 |
|
11.9/105.0 | −0.2/−0.2 | 0.1/−2.5 | 0.1/0.2 | −1.6/−0.3 | −0.5/−0.4 |
Ex3 | H• + H2S → H2 + HS• | 15.5/75.1 | 0.0/0.0 | 0.5/−2.1 | 0.2/0.5 | −2.4/−5.2 | −0.5/−0.6 |
Add1 | H• + CO → HCO• | 13.5/95.7 | 0.0/0.0 | −0.1/0.7 | 0.2/−0.7 | 2.1/−19.4 | −0.2/−0.4 |
Add2 |
|
7.9/176.5 | 0.0/0.8 | 0.3/0.1 | 0.2/−0.8 | 5.4/−17.1 | −0.3/−0.3 |
Add3 |
|
26.7/137.1 | −0.6/−0.4 | 0.3/1.2 | −1.3/−2.1 | 10.8/−10.0 | −0.8/−0.1 |
Another important issue to address is the effect of improved quantum-chemical treatments on the energetics and, for our discussion, we again resort to the “Ex” and “Add” reactions of
As already mentioned, electronic energies need to be corrected for the ZPE contributions in order to obtain the data to be used in the subsequent kinetic study. In
However, further details on the vibrational frequencies determining ZPE corrections and also thermal effects (the latter
As a last comment, we address the impact of the level of theory on the computed reaction rates. To illustrate this, we consider the rate of the H• + CO reaction in the 50–4000 K temperature range, evaluated employing the CBS-QB3, jun-Cheap, jun-F12 and HEAT-like models. The results are graphically shown in
Temperature-dependence of the H• + CO reaction rate constant calculated at the jun-Cheap and CBS-QB3 levels.
The results discussed above give full support to the reliability of the jun-Cheap and jun-F12 computational models for studying reactions of astrochemical interest. Since the explicit correlation route (jun-F12) surely deserves further investigations, in the following we retain the jun-Cheap model. One of its advantages is that it can be accessed using a large panel of available computer codes.
Among the iCOMs, the species containing the -C ≡N moiety have a strong prebiotic character because they represent key intermediates toward the formation of biomolecule building blocks such as aminoacids and nucleobases. A large number of cyanides have been detected in the ISM (
The C2H4 + CN reactive PES: Structures and relative jun-Cheap electronic energies (kJ/mol) of the stationary points ruling the addition/elimination channel.
The temperature dependence of the resulting rate constant is shown in
Rate constant as a function of the temperature (
This reaction has been investigated with a variety of experimental techniques (
The situation is more involved for methanimine because of the presence of two possible attack sites: the C-atom and N-atom of CH2NH. Analogously to the C2H4 + CN reaction, the contribution of the abstration reaction is negligible, with test computations indicating that the corresponding rate constant is at least one order of magnitude smaller than that of the addition-elimination route. The addition/elimination mechanism is depicted in
The CH2NH + CN reactive PES: Structures and relative jun-Cheap electronic energies (kJ/mol) of the stationary points ruling the addition/elimination channel.
Concerning the attack at the C-side, starting from the very stable 1Z (or 1E) pre-reactive complex, direct loss of a hydrogen atom, leading directly to the Z (or E) isomer of C-cyanomethanimine (C-CMIM), involves an exit barrier of 163.5 (or 164.1) kJ/mol. On the other hand, the stabilizing CN moiety on the carbon atom can promote hydrogen migration, which can lead to localize the unpaired electron on this atom. This migration is ruled by the transition state TS-1Z2 (TS-1E2 for the E form of C-CMIM) lying 140.1 kJ/mol above 1Z (144.0 kJ/mol above 1E for the E-route) and leads to 2, the most stable intermediate of the whole PES. Next, loss of hydrogen again leads to the Z (or E) form of C-CMIM and atomic hydrogen (denoted as PZ and PE in
Moving from thermochemistry to kinetics, the comparison between the jun-Cheap and CBS-QB3 rate constants and their temperature dependence is depicted in
Reaction rate constant (and its temperature dependence) for the formation of N-cyanomethanimine (N-CMIM) upon CN attack at the N-side of methanimine.
Reaction rate constants (and their temperature dependence) for the formation of Z and E C-CMIM upon CN attack at the C-side of methanimine.
The computed branching ratio (0.42/0.58) for the E and Z isomers at 150 K [the estimated temperature of G+0.693 where both isomers have been recently detected (
In this paper we have proposed and validated two parameter-free quantum-chemical models for the accurate study of the energetics underlying gas-phase formation routes in the interstellar medium for processes not showing strong multireference or non-adiabatic features. Comparison with state-of-the-art results for a number of model systems have convincingly shown that, starting from CCSD(T)/jun-cc-pVTZ energies evaluated on top of rev-DSD geometries, it is possible to reach kJ/mol accuracy following two different effective routes. The first alternative (jun-Cheap scheme) envisages the incorporation of two corrective terms, the CV correlation contribution and the extrapolation to the CBS limit, evaluated at the inexpensive MP2 level. The second option (jun-F12 model) employs the F12 ansatz to include explicit correlation, thus avoiding the extrapolation to the CBS limit, but still incorporating the CV correction. Next, it has been shown that accurate zero-point energies and thermal contributions can be effectively evaluated by the same rev-DSD model employed for geometry optimizations.
In the second part, the jun-Cheap scheme has been applied in the framework of the master equation/ab-initio transition state model to study the competition between abstraction and addition/elimination mechanisms in the reaction of the CN radical with ethylene and methanimine. The reaction rates obtained for these reactive systems are among the most accurate currently available (the most accurate for the C2H4 + CN system) and allow giving further support to a general model recently proposed for the formation of more complex imines in the interstellar medium (
The original contributions presented in the study are included in the article, further inquiries can be directed to the corresponding author.
All authors listed have made a substantial, direct, and intellectual contribution to the work and approved it for publication.
This work has been supported by MIUR (Grant Number 2017A4XRCA) and by the Italian Space Agency (ASI; “Life in Space” project, N. 2019-3-U.0).
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
The SMART@SNS Laboratory is acknowledged for providing high-performance computing facilities.